Philly2011

Contents

Philly 2011 OBI workshop

  • Dates: Oct 12-14, 2011
  • Location: 13th floor library, Blockley Hall on the campus of the University of Pennsylvania.

Attendees

  • Chris Stoeckert
  • Jie Zheng
  • Carlo Torniai
  • Bjoern Peters
  • Marcus Chibucos
  • Melissa Haendel
  • Matt Brush
  • Jennifer Fostel
  • Hui Gong
  • James Overton

Agenda

A (*) identifies the person that will lead the discussion and prepare slides

If projects/ communities have been targeted for grant proposal, spend time working with them on plans for future interactions that can be described in the proposal

  • Wednesday morning (Oct 12, 2011)
    • 9:00 AM: Status of development and writeup for specific aims (Bjoern*, Chris*)
    • 10:00 AM: Evidence code (Marcus*, Bjoern, Chris, Jie*, Philippe remotely)
  • Wednesday afternoon
    • 1:30 PM Integration of reagent modeling from ReO/eagle-i into OBI (Matt*, Carlo)
    • 3:00 PM: Cell, anatomical entity relation to OBI (Melissa*, Bjoern (Chris Mungall remotely?))
  • Thursday morning (Oct 13, 2011)
    • 9:00 AM: Finalize OBI core (Bjoern*, Philippe remotely)
    • 10:30 AM: Ontology View (Jie*, Chris, Oliver remotely)
  • Thursday afternoon
    • 1:30 PM: Web Services annotation (Jie*, Chris)
    • 3:30 PM: Services in general; web services integration (Jie, Carlo*)
  • Friday morning (Oct 14, 2011)
    • 9:00 AM: Phenotypes (Chris, Jie*, Marcus, Melissa*, Carlo)
    • 11:30 AM: Metadata needs: additional annotation properties for IAO(Carlo*, Matt, Melissa)
  • Friday afternoon
    • 1:30 PM: Covering clinical investigations: Duplicating / coordinating with OCRE (Melissa*; Simona and Samson remotely)
    • 3:00 PM OBI and radiology (James*)
 Notes: http://obi-ontology.org/page/Workshop#Philly2011

Presentation Slides

Please commit to OBI SVN under directory:

http://obi.svn.sourceforge.net/svnroot/obi/trunk/docs/presentations/OBI workshop Oct 2011 Philly/

Attend remotely using WebEX

Go to https://liai.webex.com/liai/j.php?ED=150322147&UID=491229897&PW=NNDIyNzYyYTcx&RT=MiM0

Airport Transportation

From Philadelphia Airport to University City / Center City

Lady Liberty Shuttle Van

  • phone: 1-215-724-8888
  • website: http://www.ladylibertyshuttle.com/
  • Lady Liberty Transportation provides door-to-door shuttle service from Philadelphia airport to all Center City and University City hotels and residences.
  • Fee: $10 per adult
  • Hours: Sunday - Saturday 7 AM - 11 PM
  • Travel Time: approximately 30-45 minutes
  • In baggage claim at each terminal, there is a ground transportation desk. The attendant will assist you in connecting with Lady Liberty to secure service. The approximate wait time is 15 minutes for a van. You must have your luggage prior to securing service.

Regional Rail (Airport Line)

Airport Line Schedule: http://www.septa.org/schedules/rail/pdf/air.pdf

  • Station close to UPenn Campus: 'university city' or '30th street station'
  • Station at Center City: Market East Station
  • Fare: $7 one-way, $12.5 round trip

Places to stay

  • In walking distance:
    • University City Sheraton[1]
    • Inn at Penn[2]

Places to eat

  • In walking distance:
    • White Dog Cafe [3]
    • Baby Blues BBQ [4]
    • Distrito [5]
  • Bistrot La Minette [6]